Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M36 Breast_Novel1_UniqueNum	BreastC_M36 Breast_Novel1_pVal	BreastC_M36 Breast_Novel1_Unique	BreastC_M36 Breast_Novel1_UniqueNum	BreastC_M36 Breast_Novel1_pVal	BreastC_M36 Breast_Novel1_Unique
ATF6_01	8	AMER2|ASPHD1|GRB2|NPTX1|PPP1R10|SEZ6L2|SLC39A5|TYRO3	8.44719291936e-05	0	8.44719291936e-05		0	8.44719291936e-05	
CACBINDINGPROTEIN_Q6	10	ASPHD1|BRSK2|GNAO1|KIRREL2|MGAT3|NXPH3|PSD|RCOR2|SEZ6L2|VGF	0.000587198027848	0	0.000587198027848		0	0.000587198027848	
CAGNWMCNNNGAC_UNKNOWN	7	CACNA1B|CHGA|CSMD3|ELAVL3|GRIN1|MGAT5B|MYF5	4.31026780535e-05	0	4.31026780535e-05		0	4.31026780535e-05	
CAHOY_NEURONAL	6	CAMK2B|CKMT1A|EPHA7|GPR22|ICAM5|LIN7B	0.000825784638163	0	0.000825784638163		0	0.000825784638163	
CNS_PNS_Node1663	13	ASIC2|CALY|CAMK2B|GDF1|GNAO1|GPR162|NPTX1|NSG2|RAB3A|SEZ6L2|SHC3|SYP|TYRO3	0.000153121128976	0	0.000153121128976		0	0.000153121128976	
Cytoplasmic vesicle	18	AP3B2|BAIAP2L2|CALY|CHGA|FAM109A|KCNQ1|NPTX1|NSG2|PPFIA3|RHBG|RILP|SCN8A|SNX22|SVOP|SYP|SYT2|TMEM198|VGF	3.52418243104e-05	0	3.52418243104e-05		0	3.52418243104e-05	
E2A_Q2	11	ELAVL3|GPR162|GRB2|GRIN1|JSRP1|KCNIP3|LDB3|MDGA1|NSG2|PSD|SLC39A5	0.000101096448996	0	0.000101096448996		0	0.000101096448996	
Exocytosis	5	BRSK2|CPLX2|LIN7B|RAB3A|UNC13A	0.000889746680133	0	0.000889746680133		0	0.000889746680133	
GSE13547_WT_VS_ZFX_KO_BCELL_ANTI_IGM_STIM_12H_UP	7	ADGRG7|ASPDH|CABP2|CHGA|HES7|SLC29A4|TTYH2	0.000832497774739	0	0.000832497774739		0	0.000832497774739	
GSE17721_LPS_VS_GARDIQUIMOD_1H_BMDC_UP	9	CDHR1|DUOXA2|GATA5|GPR162|NSG2|SERPINF2|SLC41A3|SMR3A|WFDC5	0.000605660003143	0	0.000605660003143		0	0.000605660003143	
HIF1_Q5	11	ARX|ASPHD1|BRSK2|CSMD3|EPO|FOXO4|PSD|RCOR2|RELL2|SEZ6L2|ZSWIM9	0.000148611683845	0	0.000148611683845		0	0.000148611683845	
LIU_CDX2_TARGETS_UP	4	FABP2|MSI1|MUC6|SCT	0.000845461646935	0	0.000845461646935		0	0.000845461646935	
Li(PMID: 24336226)-2013-MolSigVaccines_TBA (M70.0)	5	ELAVL3|FUT7|MAPRE3|PSD|TCF15	1.43168782176e-06	0	1.43168782176e-06		0	1.43168782176e-06	
Li(PMID: 24336226)-2013-MolSigVaccines_TBA (M70.1)	4	ELAVL3|FOXO4|FUT7|PSD	4.30864732731e-06	0	4.30864732731e-06		0	4.30864732731e-06	
Li(PMID: 24336226)-2013-MolSigVaccines_TBA (M125)	6	ADGRD2|ELAVL3|FUT7|MAPRE3|PSD|TCF15	6.27769081236e-10	0	6.27769081236e-10		0	6.27769081236e-10	
Li(PMID: 24336226)-2013-MolSigVaccines_TBA (M186)	4	ELAVL3|GRIN1|PSD|TCF15	4.30864732731e-06	0	4.30864732731e-06		0	4.30864732731e-06	
MIKKELSEN_MCV6_HCP_WITH_H3K27ME3	18	ADRA2C|AQP5|ARX|ASIC2|BRSK2|CAMK2B|DIO3|FIBCD1|FOXD3|GATA5|HMX1|KCNQ1|LRTM2|PSD2|SCN8A|SYT2|WNT7B|WNT10B	8.02234007788e-07	0	8.02234007788e-07		0	8.02234007788e-07	
MIKKELSEN_MEF_HCP_WITH_H3K27ME3	22	ADRA2C|AQP5|BRSK2|CAMK2B|CHGA|CPLX2|CPNE9|FOXD3|GATA5|HMX1|HOXB1|KCNQ1|KY|LRTM2|MGAT5B|PSD|PSD2|SCN8A|SCT|SVOP|TCF15|WNT7B	1.52769301691e-07	0	1.52769301691e-07		0	1.52769301691e-07	
MYOD_Q6_01	11	ELAVL3|GPR162|GRB2|GRIN1|JSRP1|LDB3|MDGA1|PSD|SLC39A5|VGF|ZNF710	0.00022162727621	0	0.00022162727621		0	0.00022162727621	
Mouse StemCell_Read09_438genes (19185848-TableS1)	13	ASPHD1|BRSK2|CACNA1B|CACNB4|CNIH2|GPR162|MGAT5B|NPTX1|RAB3A|SCN8A|SEZ6L2|SYP|TTYH2	5.86860064954e-05	0	5.86860064954e-05		0	5.86860064954e-05	
SRC_UP.V1_UP	10	CABP2|CEACAM19|COL26A1|CPLX2|DUOXA2|FOXO4|HMX1|ICAM5|RAB3A|TFR2	1.50451965075e-05	0	1.50451965075e-05		0	1.50451965075e-05	
anterograde trans-synaptic signaling [GoID:GO:0098916; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	18	ASIC2|CACNA1B|CACNB4|CAMK2B|CNIH2|CPLX2|GRIN1|KCNK3|LIN7B|NPTX1|PPFIA3|RAB3A|SHC3|SLC1A6|SYP|SYT2|UNC13A|VGF	0.000182308146982	0	0.000182308146982		0	0.000182308146982	
axon terminus [GoID:GO:0043679; evidenceTypes:IBA|IEA|ISS|TAS]	7	ADRA2C|CPLX2|GRIN1|KCNIP3|RAB3A|SYP|UNC13A	0.000384291365852	0	0.000384291365852		0	0.000384291365852	
chemical synaptic transmission [GoID:GO:0007268; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	18	ASIC2|CACNA1B|CACNB4|CAMK2B|CNIH2|CPLX2|GRIN1|KCNK3|LIN7B|NPTX1|PPFIA3|RAB3A|SHC3|SLC1A6|SYP|SYT2|UNC13A|VGF	0.000182308146982	0	0.000182308146982		0	0.000182308146982	
establishment of synaptic vesicle localization [GoID:GO:0097480; evidenceTypes:IBA|IEA|IGI|IMP|ISS|NAS|TAS]	7	AP3B2|CNIH2|CPLX2|RAB3A|SYP|SYT2|UNC13A	0.000685401022105	0	0.000685401022105		0	0.000685401022105	
neuron projection terminus [GoID:GO:0044306; evidenceTypes:IBA|IEA|ISS|TAS]	7	ADRA2C|CPLX2|GRIN1|KCNIP3|RAB3A|SYP|UNC13A	0.000720074472536	0	0.000720074472536		0	0.000720074472536	
neurotransmitter secretion [GoID:GO:0007269; evidenceTypes:IBA|IDA|IEA|IMP|ISS|NAS|TAS]	7	CACNA1B|CPLX2|LIN7B|PPFIA3|RAB3A|SYT2|UNC13A	0.000872903226728	0	0.000872903226728		0	0.000872903226728	
receptor ligand activity [GoID:GO:0048018; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	14	CMTM5|EPHA7|EPO|FAM3D|GDF1|IL17C|IL34|KCNK3|LACRT|PTH|SCT|VGF|WNT7B|WNT10B	0.000539847381925	0	0.000539847381925		0	0.000539847381925	
receptor regulator activity [GoID:GO:0030545; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	14	CMTM5|EPHA7|EPO|FAM3D|GDF1|IL17C|IL34|KCNK3|LACRT|PTH|SCT|VGF|WNT7B|WNT10B	0.000858550528103	0	0.000858550528103		0	0.000858550528103	
regulation of calcium ion transport [GoID:GO:0051924; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	9	CACNA1B|CACNB4|CAMK2B|EPO|GNAO1|GRIN1|JSRP1|LACRT|REM1	0.000810687684552	0	0.000810687684552		0	0.000810687684552	
regulation of neuronal synaptic plasticity [GoID:GO:0048168; evidenceTypes:IBA|IEA|IGI|IMP|ISS|NAS|TAS]	6	CAMK2B|GRIN1|PPFIA3|RAB3A|SYP|UNC13A	2.48989040082e-05	0	2.48989040082e-05		0	2.48989040082e-05	
regulation of receptor activity [GoID:GO:0010469; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	16	ADRA2C|CMTM5|CNIH2|EPHA7|EPO|FAM3D|GDF1|IL17C|IL34|KCNK3|LACRT|PTH|SCT|VGF|WNT7B|WNT10B	0.000542367883134	0	0.000542367883134		0	0.000542367883134	
regulation of short-term neuronal synaptic plasticity [GoID:GO:0048172; evidenceTypes:IBA|IEA|IMP|ISS]	4	PPFIA3|RAB3A|SYP|UNC13A	1.97626929611e-05	0	1.97626929611e-05		0	1.97626929611e-05	
regulation of synaptic plasticity [GoID:GO:0048167; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	8	CAMK2B|CPLX2|GRIN1|PPFIA3|RAB3A|SYP|UNC13A|VGF	0.000379317743086	0	0.000379317743086		0	0.000379317743086	
signal release from synapse [GoID:GO:0099643; evidenceTypes:IBA|IDA|IEA|IMP|ISS|NAS|TAS]	7	CACNA1B|CPLX2|LIN7B|PPFIA3|RAB3A|SYT2|UNC13A	0.000872903226728	0	0.000872903226728		0	0.000872903226728	
synapse organization [GoID:GO:0050808; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	10	AMIGO3|ASIC2|CACNB4|CAMK2B|EPHA7|GRIN1|LRTM2|RAB3A|UNC13A|WNT7B	0.000892915447287	0	0.000892915447287		0	0.000892915447287	
synaptic signaling [GoID:GO:0099536; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	18	ASIC2|CACNA1B|CACNB4|CAMK2B|CNIH2|CPLX2|GRIN1|KCNK3|LIN7B|NPTX1|PPFIA3|RAB3A|SHC3|SLC1A6|SYP|SYT2|UNC13A|VGF	0.00019047309498	0	0.00019047309498		0	0.00019047309498	
synaptic vesicle localization [GoID:GO:0097479; evidenceTypes:IBA|IEA|IGI|IMP|ISS|NAS|TAS]	7	AP3B2|CNIH2|CPLX2|RAB3A|SYP|SYT2|UNC13A	0.000872903226728	0	0.000872903226728		0	0.000872903226728	
synaptic vesicle maturation [GoID:GO:0016188; evidenceTypes:IBA|IEA|ISS|NAS]	3	RAB3A|SYP|UNC13A	0.000143441356837	0	0.000143441356837		0	0.000143441356837	
synaptic vesicle transport [GoID:GO:0048489; evidenceTypes:IBA|IEA|IGI|IMP|ISS|NAS|TAS]	7	AP3B2|CNIH2|CPLX2|RAB3A|SYP|SYT2|UNC13A	0.000685401022105	0	0.000685401022105		0	0.000685401022105	
terminal bouton [GoID:GO:0043195; evidenceTypes:IBA|IDA|IEA|ISS|TAS]	5	CPLX2|GRIN1|RAB3A|SYP|UNC13A	0.000889746680133	0	0.000889746680133		0	0.000889746680133	
trans-synaptic signaling [GoID:GO:0099537; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	18	ASIC2|CACNA1B|CACNB4|CAMK2B|CNIH2|CPLX2|GRIN1|KCNK3|LIN7B|NPTX1|PPFIA3|RAB3A|SHC3|SLC1A6|SYP|SYT2|UNC13A|VGF	0.00019047309498	0	0.00019047309498		0	0.00019047309498	
vesicle-mediated transport in synapse [GoID:GO:0099003; evidenceTypes:IBA|IEA|IGI|IMP|ISS|NAS|TAS]	7	AP3B2|CNIH2|CPLX2|RAB3A|SYP|SYT2|UNC13A	0.000685401022105	0	0.000685401022105		0	0.000685401022105	
